IL_9B0S_086

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

9B0S|1|L5|G|1975, 9B0S|1|L5|U|1992

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_086 not in the Motif Atlas

Homologous match to IL_8P9A_283

Geometric discrepancy: 0.3105

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

9B0S|1|L5|G|1973
9B0S|1|L5|U|1974
9B0S|1|L5|G|1975
9B0S|1|L5|G|1976
9B0S|1|L5|C|1977
*
9B0S|1|L5|G|1989
9B0S|1|L5|A|1990
9B0S|1|L5|A|1991
9B0S|1|L5|U|1992
9B0S|1|L5|C|1993

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain Ls

60S acidic ribosomal protein P0

Chain Lt

60S ribosomal protein L12 [Homo sapiens]