3D structure

PDB id
9B0S (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human top-top di-ribosome structure (Composite map)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UGUAUG*CGAAG
Length
11 nucleotides
Bulged bases
9B0S|1|L5|U|4634, 9B0S|1|L5|U|4636
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B0S_156 not in the Motif Atlas
Homologous match to IL_8P9A_346
Geometric discrepancy: 0.3225
The information below is about IL_8P9A_346
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_98200.1
Basepair signature
cWW-L-R-tHW-L-cWW
Number of instances in this motif group
3

Unit IDs

9B0S|1|L5|U|4632
9B0S|1|L5|G|4633
9B0S|1|L5|U|4634
9B0S|1|L5|A|4635
9B0S|1|L5|U|4636
9B0S|1|L5|G|4637
*
9B0S|1|L5|C|4662
9B0S|1|L5|G|4663
9B0S|1|L5|A|4664
9B0S|1|L5|A|4665
9B0S|1|L5|G|4666

Current chains

Chain L5
28S rRNA [Homo sapiens]

Nearby chains

Chain LB
Large ribosomal subunit protein uL3
Chain LW
Ribosomal protein L24
Chain Ld
60S ribosomal protein L31

Coloring options:


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