IL_9B0S_215

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_215 not in the Motif Atlas

Geometric match to IL_8HNT_001

Geometric discrepancy: 0.2435

The information below is about IL_8HNT_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

9B0S|1|S2|U|566
9B0S|1|S2|C|567
9B0S|1|S2|C|568
9B0S|1|S2|A|569
*
9B0S|1|S2|U|581
9B0S|1|S2|U|582
9B0S|1|S2|A|583
9B0S|1|S2|A|584

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SJ

40S ribosomal protein S9

Chain SY

40S ribosomal protein S24