IL_9B0S_333
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGAUC*GCGCAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0S_333 not in the Motif Atlas
- Geometric match to IL_3BBM_001
- Geometric discrepancy: 0.3586
- The information below is about IL_3BBM_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47352.1
- Basepair signature
- cWW-cWW-L-R-tHS-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
9B0S|1|l5|G|1425
9B0S|1|l5|G|1426
9B0S|1|l5|A|1427
9B0S|1|l5|U|1428
9B0S|1|l5|C|1429
*
9B0S|1|l5|G|1455
9B0S|1|l5|C|1456
9B0S|1|l5|G|1457
9B0S|1|l5|C|1458
9B0S|1|l5|A|1459
9B0S|1|l5|C|1460
Current chains
- Chain l5
- 28S rRNA [Homo sapiens]
Nearby chains
- Chain lQ
- 60S ribosomal protein L18
- Chain lb
- Large ribosomal subunit protein eL29
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