IL_9B0S_333

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_333 not in the Motif Atlas

Geometric match to IL_3BBM_001

Geometric discrepancy: 0.3586

The information below is about IL_3BBM_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.2

Basepair signature

cWW-cWW-tSH-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

9B0S|1|l5|G|1425
9B0S|1|l5|G|1426
9B0S|1|l5|A|1427
9B0S|1|l5|U|1428
9B0S|1|l5|C|1429
*
9B0S|1|l5|G|1455
9B0S|1|l5|C|1456
9B0S|1|l5|G|1457
9B0S|1|l5|C|1458
9B0S|1|l5|A|1459
9B0S|1|l5|C|1460

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain lQ

60S ribosomal protein L18

Chain lb

Large ribosomal subunit protein eL29