IL_9B0S_436

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACAUUU*ACCAU

Length

11 nucleotides

Bulged bases

9B0S|1|l5|C|4670, 9B0S|1|l5|C|4671

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_436 not in the Motif Atlas

Homologous match to IL_8GLP_317

Geometric discrepancy: 0.2904

The information below is about IL_8GLP_317

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31690.2

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

7

Unit IDs

9B0S|1|l5|A|4624
9B0S|1|l5|C|4625
9B0S|1|l5|A|4626
9B0S|1|l5|U|4627
9B0S|1|l5|U|4628
9B0S|1|l5|U|4629
*
9B0S|1|l5|A|4669
9B0S|1|l5|C|4670
9B0S|1|l5|C|4671
9B0S|1|l5|A|4672
9B0S|1|l5|U|4673

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain lB

Large ribosomal subunit protein uL3

Chain lV

60S ribosomal protein L23