IL_9B0S_496
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UCCA*UUAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0S_496 not in the Motif Atlas
- Geometric match to IL_8HNT_001
- Geometric discrepancy: 0.2326
- The information below is about IL_8HNT_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 29
Unit IDs
9B0S|1|s2|U|566
9B0S|1|s2|C|567
9B0S|1|s2|C|568
9B0S|1|s2|A|569
*
9B0S|1|s2|U|581
9B0S|1|s2|U|582
9B0S|1|s2|A|583
9B0S|1|s2|A|584
Current chains
- Chain s2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain sJ
- 40S ribosomal protein S9
- Chain sY
- 40S ribosomal protein S24
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