IL_9B0S_497
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0S_497 not in the Motif Atlas
- Homologous match to IL_8CRE_421
- Geometric discrepancy: 0.1153
- The information below is about IL_8CRE_421
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
9B0S|1|s2|A|599
9B0S|1|s2|G|600
9B0S|1|s2|G|601
9B0S|1|s2|G|602
9B0S|1|s2|C|603
9B0S|1|s2|A|604
9B0S|1|s2|A|605
9B0S|1|s2|G|606
*
9B0S|1|s2|C|636
9B0S|1|s2|U|637
Current chains
- Chain s2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain cH
- Endothelial differentiation-related factor 1
- Chain sC
- 40S ribosomal protein S2
- Chain sJ
- 40S ribosomal protein S9
- Chain se
- Small ribosomal subunit protein eS30
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