IL_9B0S_513
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0S_513 not in the Motif Atlas
- Homologous match to IL_8P9A_421
- Geometric discrepancy: 0.0648
- The information below is about IL_8P9A_421
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
9B0S|1|s2|G|942
9B0S|1|s2|U|943
9B0S|1|s2|A|944
9B0S|1|s2|U|945
*
9B0S|1|s2|A|981
9B0S|1|s2|G|982
9B0S|1|s2|A|983
9B0S|1|s2|C|984
Current chains
- Chain s2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain lA
- 60S ribosomal protein L8
- Chain lp
- 60S ribosomal protein L37a
- Chain sB
- 40S ribosomal protein S3a
- Chain sO
- Small ribosomal subunit protein uS11
- Chain sa
- 40S ribosomal protein S26
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