IL_9B0S_520

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_520 not in the Motif Atlas

Geometric match to IL_5VSU_003

Geometric discrepancy: 0.2832

The information below is about IL_5VSU_003

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

9B0S|1|s2|G|1108
9B0S|1|s2|C|1109
9B0S|1|s2|G|1110
*
9B0S|1|s2|C|1123
9B0S|1|s2|C|1124

Current chains

Chain s2

18S rRNA [Homo sapiens]

Nearby chains

Chain sA

40S ribosomal protein SA

Chain sB

40S ribosomal protein S3a

Chain sR

40S ribosomal protein S17