IL_9B0S_532
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 9B0S|1|s2|C|1331, 9B0S|1|s2|U|1494, 9B0S|1|s2|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0S_532 not in the Motif Atlas
- Geometric match to IL_8P9A_439
- Geometric discrepancy: 0.1433
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86012.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
9B0S|1|s2|U|1329
9B0S|1|s2|G|1330
9B0S|1|s2|C|1331
9B0S|1|s2|A|1332
9B0S|1|s2|U|1333
9B0S|1|s2|G|1334
9B0S|1|s2|G|1335
*
9B0S|1|s2|U|1492
9B0S|1|s2|C|1493
9B0S|1|s2|U|1494
9B0S|1|s2|G|1495
9B0S|1|s2|U|1496
9B0S|1|s2|G|1497
9B0S|1|s2|A|1498
9B0S|1|s2|U|1499
9B0S|1|s2|G|1500
Current chains
- Chain s2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain aP
- Transfer RNA; tRNA
- Chain cH
- Endothelial differentiation-related factor 1
- Chain sD
- Small ribosomal subunit protein uS3
- Chain sK
- 40S ribosomal protein S10
- Chain sU
- 40S ribosomal protein S20
- Chain sd
- 40S ribosomal protein S29
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