IL_9B11_128

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

9B11|1|L5|A|4385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B11_128 not in the Motif Atlas

Homologous match to IL_8P9A_322

Geometric discrepancy: 0.0627

The information below is about IL_8P9A_322

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

9B11|1|L5|G|3916
9B11|1|L5|A|3917
*
9B11|1|L5|U|4384
9B11|1|L5|A|4385
9B11|1|L5|C|4386
9B11|1|L5|C|4387

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8