3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
CGAAG*CGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B11_236 not in the Motif Atlas
Homologous match to IL_8CRE_438
Geometric discrepancy: 0.0602
The information below is about IL_8CRE_438
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

9B11|1|S2|C|1047
9B11|1|S2|G|1048
9B11|1|S2|A|1049
9B11|1|S2|A|1050
9B11|1|S2|G|1051
*
9B11|1|S2|C|1067
9B11|1|S2|G|1068
9B11|1|S2|U|1069
9B11|1|S2|A|1070
9B11|1|S2|G|1071

Current chains

Chain S2
18S rRNA

Nearby chains

Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain LA
60S ribosomal protein L8
Chain SO
Small ribosomal subunit protein uS11
Chain Sa
40S ribosomal protein S26

Coloring options:


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