IL_9B24_134

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

AGGACC*GAGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B24_134 not in the Motif Atlas

Geometric match to IL_3FTF_001

Geometric discrepancy: 0.3274

The information below is about IL_3FTF_001

Detailed Annotation

Quadruple sheared

Broad Annotation

No text annotation

Motif group

IL_29495.1

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9B24|1|Y|A|2073
9B24|1|Y|G|2074
9B24|1|Y|G|2075
9B24|1|Y|A|2076
9B24|1|Y|C|2077
9B24|1|Y|C|2078
*
9B24|1|Y|G|2105
9B24|1|Y|A|2106
9B24|1|Y|G|2107
9B24|1|Y|A|2108
9B24|1|Y|A|2109
9B24|1|Y|U|2110

Current chains

Chain Y

23S rRNA

Nearby chains