IL_9B24_159
3D structure
- PDB id
- 9B24 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT strain gidB mutant mycobacterial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- UUGAG*CAAGACCAG
- Length
- 14 nucleotides
- Bulged bases
- 9B24|1|Y|G|3001, 9B24|1|Y|C|3004
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B24_159 not in the Motif Atlas
- Homologous match to IL_5J7L_345
- Geometric discrepancy: 0.2165
- The information below is about IL_5J7L_345
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.3
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9B24|1|Y|U|2860
9B24|1|Y|U|2861
9B24|1|Y|G|2862
9B24|1|Y|A|2863
9B24|1|Y|G|2864
*
9B24|1|Y|C|2998
9B24|1|Y|A|2999
9B24|1|Y|A|3000
9B24|1|Y|G|3001
9B24|1|Y|A|3002
9B24|1|Y|C|3003
9B24|1|Y|C|3004
9B24|1|Y|A|3005
9B24|1|Y|G|3006
Current chains
- Chain Y
- 23S rRNA
Nearby chains
- Chain a
- Large ribosomal subunit protein uL3
- Chain f
- Large ribosomal subunit protein uL13
Coloring options: