IL_9B50_035

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

9B50|1|AA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_035 not in the Motif Atlas

Geometric match to IL_8B0X_034

Geometric discrepancy: 0.0727

The information below is about IL_8B0X_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54465.1

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

7

Unit IDs

9B50|1|AA|U|684
9B50|1|AA|G|685
9B50|1|AA|U|686
9B50|1|AA|A|687
9B50|1|AA|G|688
*
9B50|1|AA|C|699
9B50|1|AA|G|700
9B50|1|AA|U|701
9B50|1|AA|A|702
9B50|1|AA|G|703
9B50|1|AA|A|704
9B50|1|AA|G|705
9B50|1|AA|A|706

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain BA

23S ribosomal RNA