IL_9B50_051

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAGC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_051 not in the Motif Atlas

Geometric match to IL_3MXH_005

Geometric discrepancy: 0.2056

The information below is about IL_3MXH_005

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_87975.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

9B50|1|AA|C|1129
9B50|1|AA|A|1130
9B50|1|AA|G|1131
9B50|1|AA|C|1132
*
9B50|1|AA|G|1142
9B50|1|AA|G|1143

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AI

30S ribosomal protein S9