IL_9B50_056

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_056 not in the Motif Atlas

Geometric match to IL_8B0X_056

Geometric discrepancy: 0.1257

The information below is about IL_8B0X_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9B50|1|AA|C|1303
9B50|1|AA|G|1304
9B50|1|AA|G|1305
9B50|1|AA|A|1306
9B50|1|AA|U|1307
9B50|1|AA|U|1308
*
9B50|1|AA|A|1329
9B50|1|AA|U|1330
9B50|1|AA|G|1331
9B50|1|AA|A|1332
9B50|1|AA|A|1333
9B50|1|AA|G|1334

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AM

30S ribosomal protein S13