IL_9B50_099

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_099 not in the Motif Atlas

Geometric match to IL_8B0X_098

Geometric discrepancy: 0.0404

The information below is about IL_8B0X_098

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

9B50|1|BA|U|1004
9B50|1|BA|C|1005
9B50|1|BA|C|1006
9B50|1|BA|C|1007
9B50|1|BA|A|1008
9B50|1|BA|A|1009
9B50|1|BA|A|1010
9B50|1|BA|G|1011
*
9B50|1|BA|C|1150
9B50|1|BA|A|1151

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BJ

50S ribosomal protein L13

Chain BQ

50S ribosomal protein L20