IL_9B50_118

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

9B50|1|BA|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_118 not in the Motif Atlas

Geometric match to IL_8B0X_116

Geometric discrepancy: 0.0526

The information below is about IL_8B0X_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9B50|1|BA|C|1437
9B50|1|BA|U|1438
9B50|1|BA|A|1439
9B50|1|BA|U|1440
*
9B50|1|BA|A|1551
9B50|1|BA|A|1552
9B50|1|BA|A|1553
9B50|1|BA|U|1554
9B50|1|BA|G|1555

Current chains

Chain BA

23S ribosomal RNA

Nearby chains