IL_9BH5_034
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 9BH5|1|A5|A|988, 9BH5|1|A5|G|992
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_034 not in the Motif Atlas
- Geometric match to IL_5TBW_028
- Geometric discrepancy: 0.0582
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
9BH5|1|A5|G|860
9BH5|1|A5|A|861
9BH5|1|A5|A|862
9BH5|1|A5|A|863
9BH5|1|A5|G|864
*
9BH5|1|A5|C|986
9BH5|1|A5|U|987
9BH5|1|A5|A|988
9BH5|1|A5|G|989
9BH5|1|A5|U|990
9BH5|1|A5|A|991
9BH5|1|A5|G|992
9BH5|1|A5|C|993
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain CC
- Large ribosomal subunit protein uL4
- Chain CL
- Large ribosomal subunit protein eL13
- Chain CN
- Large ribosomal subunit protein eL15
- Chain Ca
- Large ribosomal subunit protein uL15
- Chain Cj
- Ribosomal protein L37
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