IL_9BH5_039
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 9BH5|1|A5|G|963, 9BH5|1|A5|A|975, 9BH5|1|A5|A|976
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_039 not in the Motif Atlas
- Geometric match to IL_5TBW_033
- Geometric discrepancy: 0.0714
- The information below is about IL_5TBW_033
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9BH5|1|A5|G|962
9BH5|1|A5|G|963
9BH5|1|A5|G|964
*
9BH5|1|A5|U|974
9BH5|1|A5|A|975
9BH5|1|A5|A|976
9BH5|1|A5|U|977
9BH5|1|A5|C|978
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain CA
- Large ribosomal subunit protein uL2
- Chain CN
- Large ribosomal subunit protein eL15
- Chain CP
- Large ribosomal subunit protein uL22
- Chain Cj
- Ribosomal protein L37
Coloring options: