IL_9BH5_054
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UGCCUAAC*GA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_054 not in the Motif Atlas
- Homologous match to IL_8C3A_052
- Geometric discrepancy: 0.086
- The information below is about IL_8C3A_052
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
9BH5|1|A5|U|1225
9BH5|1|A5|G|1226
9BH5|1|A5|C|1227
9BH5|1|A5|C|1228
9BH5|1|A5|U|1229
9BH5|1|A5|A|1230
9BH5|1|A5|A|1231
9BH5|1|A5|C|1232
*
9BH5|1|A5|G|1377
9BH5|1|A5|A|1378
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain CF
- Large ribosomal subunit protein uL30
- Chain CO
- Large ribosomal subunit protein uL13
- Chain CS
- Large ribosomal subunit protein eL20
- Chain Cf
- Large ribosomal subunit protein eL33
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