IL_9BH5_056
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CUCAUGAG*CUUAAG
- Length
- 14 nucleotides
- Bulged bases
- 9BH5|1|A5|U|1243, 9BH5|1|A5|G|1244, 9BH5|1|A5|U|1368, 9BH5|1|A5|A|1370
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_056 not in the Motif Atlas
- Homologous match to IL_8C3A_054
- Geometric discrepancy: 0.0848
- The information below is about IL_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
9BH5|1|A5|C|1239
9BH5|1|A5|U|1240
9BH5|1|A5|C|1241
9BH5|1|A5|A|1242
9BH5|1|A5|U|1243
9BH5|1|A5|G|1244
9BH5|1|A5|A|1245
9BH5|1|A5|G|1246
*
9BH5|1|A5|C|1366
9BH5|1|A5|U|1367
9BH5|1|A5|U|1368
9BH5|1|A5|A|1369
9BH5|1|A5|A|1370
9BH5|1|A5|G|1371
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain CH
- Large ribosomal subunit protein uL6
- Chain CM
- Large ribosomal subunit protein eL14
- Chain CO
- Large ribosomal subunit protein uL13
- Chain CS
- Large ribosomal subunit protein eL20
- Chain Cm
- Ubiquitin-ribosomal protein eL40 fusion protein
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