IL_9BH5_062

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_062 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.0682

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

9BH5|1|A5|G|1509
9BH5|1|A5|U|1510
9BH5|1|A5|A|1511
9BH5|1|A5|G|1512
9BH5|1|A5|U|1513
9BH5|1|A5|A|1514
9BH5|1|A5|G|1515
*
9BH5|1|A5|C|2457
9BH5|1|A5|G|2458
9BH5|1|A5|A|2459
9BH5|1|A5|A|2460
9BH5|1|A5|A|2461
9BH5|1|A5|C|2462

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CC

Large ribosomal subunit protein uL4

Chain CP

Large ribosomal subunit protein uL22