IL_9BH5_068

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CGAAC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_068 not in the Motif Atlas

Homologous match to IL_5TBW_067

Geometric discrepancy: 0.1846

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

9BH5|1|A5|C|1739
9BH5|1|A5|G|1740
9BH5|1|A5|A|1741
9BH5|1|A5|A|1742
9BH5|1|A5|C|1743
*
9BH5|1|A5|G|1900
9BH5|1|A5|G|1901
9BH5|1|A5|G|1902
9BH5|1|A5|A|1903
9BH5|1|A5|G|1904

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CA

Large ribosomal subunit protein uL2

Chain CZ

Large ribosomal subunit protein eL27

Chain Cg

Large ribosomal subunit protein eL34