IL_9BH5_076

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AAUAAUG*CUUU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_076 not in the Motif Atlas

Homologous match to IL_5TBW_074

Geometric discrepancy: 0.0914

The information below is about IL_5TBW_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

9BH5|1|A5|A|1976
9BH5|1|A5|A|1977
9BH5|1|A5|U|1978
9BH5|1|A5|A|1979
9BH5|1|A5|A|1980
9BH5|1|A5|U|1981
9BH5|1|A5|G|1982
*
9BH5|1|A5|C|2449
9BH5|1|A5|U|2450
9BH5|1|A5|U|2451
9BH5|1|A5|U|2452

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CB

Large ribosomal subunit protein uL3

Chain CP

Large ribosomal subunit protein uL22

Chain Cd

Large ribosomal subunit protein eL31