IL_9BH5_087

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

9BH5|1|A5|A|2345, 9BH5|1|A5|A|2346

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_087 not in the Motif Atlas

Homologous match to IL_5TBW_085

Geometric discrepancy: 0.0734

The information below is about IL_5TBW_085

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

9BH5|1|A5|U|2303
9BH5|1|A5|G|2304
*
9BH5|1|A5|U|2344
9BH5|1|A5|A|2345
9BH5|1|A5|A|2346
9BH5|1|A5|A|2347

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CA

Large ribosomal subunit protein uL2