IL_9BH5_105
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CAG*CGUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_105 not in the Motif Atlas
- Geometric match to IL_5TBW_099
- Geometric discrepancy: 0.1158
- The information below is about IL_5TBW_099
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_71241.2
- Basepair signature
- cWW-cWW-tSH-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
9BH5|1|A5|C|2778
9BH5|1|A5|A|2779
9BH5|1|A5|G|2780
*
9BH5|1|A5|C|2798
9BH5|1|A5|G|2799
9BH5|1|A5|U|2800
9BH5|1|A5|A|2801
9BH5|1|A5|G|2802
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain A7
- 5S ribosomal RNA; 5S rRNA
- Chain CD
- Large ribosomal subunit protein uL18
- Chain CJ
- Large ribosomal subunit protein uL5B
- Chain CT
- Large ribosomal subunit protein eL21
Coloring options: