IL_9BH5_107
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UUGA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_107 not in the Motif Atlas
- Homologous match to IL_5TBW_100
- Geometric discrepancy: 0.1927
- The information below is about IL_5TBW_100
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
9BH5|1|A5|U|2830
9BH5|1|A5|U|2831
9BH5|1|A5|G|2832
9BH5|1|A5|A|2833
*
9BH5|1|A5|U|2847
9BH5|1|A5|A|2848
9BH5|1|A5|C|2849
9BH5|1|A5|A|2850
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain CD
- Large ribosomal subunit protein uL18
- Chain CQ
- Large ribosomal subunit protein eL18
- Chain CT
- Large ribosomal subunit protein eL21
- Chain Cb
- 60S ribosomal protein L29
- Chain Co
- Large ribosomal subunit protein eL42
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