IL_9BH5_125

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CUUAGUAC*GGAACAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_125 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.1648

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

9BH5|1|A5|C|3131
9BH5|1|A5|U|3132
9BH5|1|A5|U|3133
9BH5|1|A5|A|3134
9BH5|1|A5|G|3135
9BH5|1|A5|U|3136
9BH5|1|A5|A|3137
9BH5|1|A5|C|3138
*
9BH5|1|A5|G|3143
9BH5|1|A5|G|3144
9BH5|1|A5|A|3145
9BH5|1|A5|A|3146
9BH5|1|A5|C|3147
9BH5|1|A5|A|3148
9BH5|1|A5|G|3149

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CB

Large ribosomal subunit protein uL3

Chain CH

Large ribosomal subunit protein uL6