IL_9BH5_143
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GAAUGCA*UUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_143 not in the Motif Atlas
- Homologous match to IL_8C3A_144
- Geometric discrepancy: 0.1279
- The information below is about IL_8C3A_144
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_45841.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9BH5|1|A7|G|21
9BH5|1|A7|A|22
9BH5|1|A7|A|23
9BH5|1|A7|U|24
9BH5|1|A7|G|25
9BH5|1|A7|C|26
9BH5|1|A7|A|27
*
9BH5|1|A7|U|52
9BH5|1|A7|U|53
9BH5|1|A7|A|54
9BH5|1|A7|A|55
9BH5|1|A7|G|56
9BH5|1|A7|C|57
Current chains
- Chain A7
- 5S rRNA
Nearby chains
- Chain CD
- Large ribosomal subunit protein uL18
- Chain CJ
- Large ribosomal subunit protein uL5B
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