IL_9BH5_161
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UUUCAA*UUGUUACG
- Length
- 14 nucleotides
- Bulged bases
- 9BH5|1|B2|U|295, 9BH5|1|B2|U|331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_161 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.0863
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
9BH5|1|B2|U|293
9BH5|1|B2|U|294
9BH5|1|B2|U|295
9BH5|1|B2|C|296
9BH5|1|B2|A|297
9BH5|1|B2|A|298
*
9BH5|1|B2|U|328
9BH5|1|B2|U|329
9BH5|1|B2|G|330
9BH5|1|B2|U|331
9BH5|1|B2|U|332
9BH5|1|B2|A|333
9BH5|1|B2|C|334
9BH5|1|B2|G|335
Current chains
- Chain B2
- 18S rRNA
Nearby chains
- Chain AI
- Small ribosomal subunit protein eS8
- Chain AL
- Small ribosomal subunit protein uS17
- Chain AX
- Small ribosomal subunit protein uS12
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