IL_9BH5_172
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 9BH5|1|B2|A|555
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_172 not in the Motif Atlas
- Homologous match to IL_8C3A_425
- Geometric discrepancy: 0.1857
- The information below is about IL_8C3A_425
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.2
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9BH5|1|B2|G|538
9BH5|1|B2|U|539
9BH5|1|B2|G|540
9BH5|1|B2|C|541
9BH5|1|B2|C|542
9BH5|1|B2|A|543
9BH5|1|B2|G|544
*
9BH5|1|B2|C|551
9BH5|1|B2|G|552
9BH5|1|B2|G|553
9BH5|1|B2|U|554
9BH5|1|B2|A|555
9BH5|1|B2|A|556
9BH5|1|B2|U|557
9BH5|1|B2|U|558
9BH5|1|B2|C|559
Current chains
- Chain B2
- 18S rRNA
Nearby chains
- Chain AD
- Small ribosomal subunit protein uS3
- Chain AX
- Small ribosomal subunit protein uS12
- Chain Ae
- Ubiquitin-like domain-containing protein
- Chain DB
- Transfer RNA; tRNA
- Chain DC
- mRNA
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