IL_9BH5_182

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AAACC*GAAU

Length

9 nucleotides

Bulged bases

9BH5|1|B2|A|837

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_182 not in the Motif Atlas

Homologous match to IL_4V88_430

Geometric discrepancy: 0.2176

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

9BH5|1|B2|A|835
9BH5|1|B2|A|836
9BH5|1|B2|A|837
9BH5|1|B2|C|838
9BH5|1|B2|C|839
*
9BH5|1|B2|G|918
9BH5|1|B2|A|919
9BH5|1|B2|A|920
9BH5|1|B2|U|921

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AB

Small ribosomal subunit protein eS1

Chain AN

Small ribosomal subunit protein uS15

Chain Ab

Small ribosomal subunit protein eS27