IL_9BH5_229
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 9BH5|1|B2|C|1233, 9BH5|1|B2|U|1388, 9BH5|1|B2|G|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_229 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.0971
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.2
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
9BH5|1|B2|U|1231
9BH5|1|B2|G|1232
9BH5|1|B2|C|1233
9BH5|1|B2|A|1234
9BH5|1|B2|U|1235
9BH5|1|B2|G|1236
9BH5|1|B2|G|1237
*
9BH5|1|B2|U|1386
9BH5|1|B2|C|1387
9BH5|1|B2|U|1388
9BH5|1|B2|G|1389
9BH5|1|B2|U|1390
9BH5|1|B2|G|1391
9BH5|1|B2|A|1392
9BH5|1|B2|U|1393
9BH5|1|B2|G|1394
Current chains
- Chain B2
- 18S rRNA
Nearby chains
- Chain AD
- Small ribosomal subunit protein uS3
- Chain AK
- Plectin/S10 N-terminal domain-containing protein
- Chain AU
- Small ribosomal subunit protein uS10
- Chain Ad
- Small ribosomal subunit protein uS14
- Chain DB
- Transfer RNA; tRNA
- Chain DC
- mRNA
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