IL_9BUP_031
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAGAG*CUAUUAGC
- Length
- 13 nucleotides
- Bulged bases
- 9BUP|1|AA|A|1052, 9BUP|1|AA|G|1056
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_031 not in the Motif Atlas
- Homologous match to IL_8CRE_030
- Geometric discrepancy: 0.1258
- The information below is about IL_8CRE_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_54041.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
9BUP|1|AA|G|924
9BUP|1|AA|A|925
9BUP|1|AA|G|926
9BUP|1|AA|A|927
9BUP|1|AA|G|928
*
9BUP|1|AA|C|1050
9BUP|1|AA|U|1051
9BUP|1|AA|A|1052
9BUP|1|AA|U|1053
9BUP|1|AA|U|1054
9BUP|1|AA|A|1055
9BUP|1|AA|G|1056
9BUP|1|AA|C|1057
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein L4
- Chain AL
- 60S ribosomal protein L13
- Chain AO
- 60S ribosomal protein L27a
- Chain AP
- Ribosomal protein L15
- Chain Ac
- Ribosomal protein L37
Coloring options: