IL_9BUP_043
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAUAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 9BUP|1|AA|U|1123
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_043 not in the Motif Atlas
- Homologous match to IL_8CRE_043
- Geometric discrepancy: 0.3325
- The information below is about IL_8CRE_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_26222.2
- Basepair signature
- cWW-cWS-cSH-tWH-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
9BUP|1|AA|G|1121
9BUP|1|AA|A|1122
9BUP|1|AA|U|1123
9BUP|1|AA|A|1124
9BUP|1|AA|A|1125
9BUP|1|AA|U|1126
*
9BUP|1|AA|A|1169
9BUP|1|AA|A|1170
9BUP|1|AA|A|1171
9BUP|1|AA|C|1172
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain AQ
- 60S ribosomal protein L10
- Chain AR
- 60S ribosomal protein L5
- Chain AV
- 60S ribosomal protein L21
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