IL_9BUP_058
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGUUGAAG*UGGAA
- Length
- 13 nucleotides
- Bulged bases
- 9BUP|1|AA|U|1539
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_058 not in the Motif Atlas
- Homologous match to IL_8P9A_287
- Geometric discrepancy: 0.265
- The information below is about IL_8P9A_287
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 30
Unit IDs
9BUP|1|AA|U|1536
9BUP|1|AA|G|1537
9BUP|1|AA|U|1538
9BUP|1|AA|U|1539
9BUP|1|AA|G|1540
9BUP|1|AA|A|1541
9BUP|1|AA|A|1542
9BUP|1|AA|G|1543
*
9BUP|1|AA|U|1563
9BUP|1|AA|G|1564
9BUP|1|AA|G|1565
9BUP|1|AA|A|1566
9BUP|1|AA|A|1567
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A8
- 60S ribosomal protein L32
- Chain AC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AF
- 60S ribosomal protein L4
- Chain AZ
- 60S ribosomal protein L26
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