IL_9BUP_061

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCAAC*GAA

Length

8 nucleotides

Bulged bases

9BUP|1|AA|A|1663

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_061 not in the Motif Atlas

Homologous match to IL_8CRE_066

Geometric discrepancy: 0.1242

The information below is about IL_8CRE_066

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

9BUP|1|AA|U|1650
9BUP|1|AA|C|1651
9BUP|1|AA|A|1652
9BUP|1|AA|A|1653
9BUP|1|AA|C|1654
*
9BUP|1|AA|G|1662
9BUP|1|AA|A|1663
9BUP|1|AA|A|1664

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein L19

Chain AW

60S ribosomal protein L17

Chain Ae

60S ribosomal protein L39