IL_9BUP_062
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUAAG*CAAAAG
- Length
- 11 nucleotides
- Bulged bases
- 9BUP|1|AA|A|1731, 9BUP|1|AA|A|1732
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_062 not in the Motif Atlas
- Homologous match to IL_8P9A_291
- Geometric discrepancy: 0.1079
- The information below is about IL_8P9A_291
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.1
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 22
Unit IDs
9BUP|1|AA|C|1681
9BUP|1|AA|U|1682
9BUP|1|AA|A|1683
9BUP|1|AA|A|1684
9BUP|1|AA|G|1685
*
9BUP|1|AA|C|1728
9BUP|1|AA|A|1729
9BUP|1|AA|A|1730
9BUP|1|AA|A|1731
9BUP|1|AA|A|1732
9BUP|1|AA|G|1733
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AD
- 60S ribosomal protein L2
- Chain Aa
- 60S ribosomal protein L34
- Chain Ac
- Ribosomal protein L37
- Chain Ae
- 60S ribosomal protein L39
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