IL_9BUP_065

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAC*GGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_065 not in the Motif Atlas

Homologous match to IL_8CRE_072

Geometric discrepancy: 0.1283

The information below is about IL_8CRE_072

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9BUP|1|AA|U|1800
9BUP|1|AA|G|1801
9BUP|1|AA|A|1802
9BUP|1|AA|A|1803
9BUP|1|AA|C|1804
*
9BUP|1|AA|G|2028
9BUP|1|AA|G|2029
9BUP|1|AA|G|2030
9BUP|1|AA|A|2031
9BUP|1|AA|A|2032

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A1

60S ribosomal protein L27

Chain AD

60S ribosomal protein L2

Chain Aa

60S ribosomal protein L34