IL_9BUP_067

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAC*GUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_067 not in the Motif Atlas

Geometric match to IL_8P9A_394

Geometric discrepancy: 0.1788

The information below is about IL_8P9A_394

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

9BUP|1|AA|U|1821
9BUP|1|AA|A|1822
9BUP|1|AA|C|1823
*
9BUP|1|AA|G|2003
9BUP|1|AA|U|2004
9BUP|1|AA|A|2005

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain Aa

60S ribosomal protein L34