IL_9BUP_124

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUUU*GCUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_124 not in the Motif Atlas

Geometric match to IL_8X5V_001

Geometric discrepancy: 0.1635

The information below is about IL_8X5V_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9BUP|1|AA|U|3629
9BUP|1|AA|U|3630
9BUP|1|AA|U|3631
9BUP|1|AA|U|3632
*
9BUP|1|AA|G|3653
9BUP|1|AA|C|3654
9BUP|1|AA|U|3655
9BUP|1|AA|A|3656

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AI

60S ribosomal protein L6

Chain AK

60S ribosomal protein L13

Chain AN

60S ribosomal protein L14