IL_9BUP_150

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAGU*AG

Length

6 nucleotides

Bulged bases

9BUP|1|SA|A|116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_150 not in the Motif Atlas

Homologous match to IL_8CRE_398

Geometric discrepancy: 0.1806

The information below is about IL_8CRE_398

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

9BUP|1|SA|U|115
9BUP|1|SA|A|116
9BUP|1|SA|G|117
9BUP|1|SA|U|118
*
9BUP|1|SA|A|306
9BUP|1|SA|G|307

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SF

40S ribosomal protein S4

Chain SL

40S ribosomal protein S8

Chain SV

40S ribosomal protein S11