IL_9BUP_155
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UAUCAG*CUAUGACG
- Length
- 14 nucleotides
- Bulged bases
- 9BUP|1|SA|U|319, 9BUP|1|SA|U|357
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_155 not in the Motif Atlas
- Homologous match to IL_8CRE_408
- Geometric discrepancy: 0.1167
- The information below is about IL_8CRE_408
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.4
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9BUP|1|SA|U|317
9BUP|1|SA|A|318
9BUP|1|SA|U|319
9BUP|1|SA|C|320
9BUP|1|SA|A|321
9BUP|1|SA|G|322
*
9BUP|1|SA|C|354
9BUP|1|SA|U|355
9BUP|1|SA|A|356
9BUP|1|SA|U|357
9BUP|1|SA|G|358
9BUP|1|SA|A|359
9BUP|1|SA|C|360
9BUP|1|SA|G|361
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain SL
- 40S ribosomal protein S8
- Chain SQ
- 40S ribosomal protein S23
- Chain SV
- 40S ribosomal protein S11
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