IL_9BUP_164
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_164 not in the Motif Atlas
- Homologous match to IL_8CRE_421
- Geometric discrepancy: 0.0732
- The information below is about IL_8CRE_421
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
9BUP|1|SA|A|557
9BUP|1|SA|G|558
9BUP|1|SA|G|559
9BUP|1|SA|G|560
9BUP|1|SA|C|561
9BUP|1|SA|A|562
9BUP|1|SA|A|563
9BUP|1|SA|G|564
*
9BUP|1|SA|C|594
9BUP|1|SA|U|595
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain S6
- 40S ribosomal protein S30
- Chain SE
- 40S ribosomal protein S9
- Chain SG
- 40S ribosomal protein S5
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