IL_9BUP_169
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_169 not in the Motif Atlas
- Homologous match to IL_8CRE_426
- Geometric discrepancy: 0.0538
- The information below is about IL_8CRE_426
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
9BUP|1|SA|C|634
9BUP|1|SA|G|635
9BUP|1|SA|U|636
9BUP|1|SA|A|637
9BUP|1|SA|G|638
*
9BUP|1|SA|U|1037
9BUP|1|SA|C|1038
9BUP|1|SA|A|1039
9BUP|1|SA|A|1040
9BUP|1|SA|G|1041
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain SK
- 40S ribosomal protein S15A
- Chain SQ
- 40S ribosomal protein S23
- Chain SU
- 40S ribosomal protein S15
- Chain SV
- 40S ribosomal protein S11
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