IL_9BUP_178

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BUP_178 not in the Motif Atlas

Geometric match to IL_8P9A_417

Geometric discrepancy: 0.0686

The information below is about IL_8P9A_417

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

9BUP|1|SA|A|933
9BUP|1|SA|G|934
*
9BUP|1|SA|C|1031
9BUP|1|SA|A|1032
9BUP|1|SA|U|1033
9BUP|1|SA|U|1034

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S27

Chain SK

40S ribosomal protein S15A

Chain SU

40S ribosomal protein S15