IL_9BUP_182
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_182 not in the Motif Atlas
- Homologous match to IL_8P9A_421
- Geometric discrepancy: 0.1152
- The information below is about IL_8P9A_421
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
9BUP|1|SA|G|954
9BUP|1|SA|U|955
9BUP|1|SA|A|956
9BUP|1|SA|U|957
*
9BUP|1|SA|A|993
9BUP|1|SA|G|994
9BUP|1|SA|A|995
9BUP|1|SA|C|996
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain AD
- 60S ribosomal protein L2
- Chain S3
- 40S ribosomal protein S26
- Chain SB
- 40S ribosomal protein S3a
- Chain SP
- 40S ribosomal protein S11
Coloring options: