IL_9BUP_188
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAGUAUU*AGAAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BUP_188 not in the Motif Atlas
- Homologous match to IL_8CRE_442
- Geometric discrepancy: 0.0883
- The information below is about IL_8CRE_442
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9BUP|1|SA|C|1212
9BUP|1|SA|G|1213
9BUP|1|SA|A|1214
9BUP|1|SA|G|1215
9BUP|1|SA|U|1216
9BUP|1|SA|A|1217
9BUP|1|SA|U|1218
9BUP|1|SA|U|1219
*
9BUP|1|SA|A|1230
9BUP|1|SA|G|1231
9BUP|1|SA|A|1232
9BUP|1|SA|A|1233
9BUP|1|SA|A|1234
9BUP|1|SA|G|1235
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ag
- 60S ribosomal protein L41
- Chain SQ
- 40S ribosomal protein S23
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